PMADRA (Poly-Multiplicity Airborne Disease Risk Assemment)
Software suite to help evaluate infection risks (aerosol risk only) and infectious aerosol concentrations in indoor environments in the presence of an airborne disease using a Well-Riley formulation that explicitly considers the number of pathogen copies per aerosol (each aerosol has 0, 1, 2, ... pathogen copies in them). This is a poly-pathogen model rather than a mono-pathogen model. The model is described by our manuscript:
Freja Nordsiek, Eberhard Bodenschatz & Gholamhossein Bagheri. Risk assessment for airborne disease transmission by poly-pathogen aerosols. accepted (2021)
arXiv: 2011.14118 [q-bio.QM]
medRxiv: 2020.11.30.20241083
The software suite is composed of two packages, both of which have MIT licenses. Note that the manuscript used version 0.2.1 of both packages.
pypmadra
Python 3.5+ package. MIT license. Can use libpmadra as an optional accelerator.Important Links
| Source Repository: | https://gitlab.gwdg.de/mpids-lfpn-public/pmadra/pypmadra |
| Releases on: | repository |
Releases
| Version | Date | Wheel | Sdist | Checksum |
|---|---|---|---|---|
| 0.3 | 2021-02-23 | pypmadra-0.3-py2.py3-none-any.whl | pypmadra-0.3.zip | pypmadra-0.3.sha256 |
| 0.2.1 | 2021-02-05 | pypmadra-0.2.1-py2.py3-none-any.whl | pypmadra-0.2.1.zip | pypmadra-0.2.1.sha256 |
| 0.2 | 2021-01-11 | pypmadra-0.2-py2.py3-none-any.whl | pypmadra-0.2.zip | pypmadra-0.2.sha256 |
libpmadra
Fortran 2008 library with C bindings. MIT license.Important Links
| Source Repository: | https://gitlab.gwdg.de/mpids-lfpn-public/pmadra/libpmadra |
| Releases on: | repository |
Releases
| Version | Date | Source Tarball (gzipped) | Checksum |
|---|---|---|---|
| 0.2.1 | 2021-02-05 | libpmadra-0.2.1-Source.tar.gz | libpmadra-0.2.1-Source.tar.gz.sha256 |
| 0.2 | 2021-01-11 | libpmadra-0.2.0-Source.tar.gz | libpmadra-0.2.0-Source.tar.gz.sha256 |